IL_8G38_070

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8G38|1|B|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_070 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0903

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8G38|1|B|C|1686
8G38|1|B|G|1687
8G38|1|B|U|1688
8G38|1|B|A|1689
8G38|1|B|A|1690
8G38|1|B|C|1691
*
8G38|1|B|G|1696
8G38|1|B|G|1697
8G38|1|B|A|1698
8G38|1|B|G|1699
8G38|1|B|A|1700
8G38|1|B|A|1701
8G38|1|B|G|1702

Current chains

Chain B

23S

Nearby chains

Chain C

50S ribosomal protein L2

Chain v

Small subunit ribosomal RNA; SSU rRNA