IL_8G4S_001
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- CAAG*CGACG
- Length
- 9 nucleotides
- Bulged bases
- 8G4S|1|2|A|380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G4S_001 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.3207
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
8G4S|1|2|C|37
8G4S|1|2|A|38
8G4S|1|2|A|39
8G4S|1|2|G|40
*
8G4S|1|2|C|378
8G4S|1|2|G|379
8G4S|1|2|A|380
8G4S|1|2|C|381
8G4S|1|2|G|382
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain J
- Ribosomal protein S9
Coloring options: