IL_8G4S_011

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGGCGCCCGG*CAGC

Length

14 nucleotides

Bulged bases

8G4S|1|2|C|173, 8G4S|1|2|G|180

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G4S|1|2|G|170
8G4S|1|2|G|171
8G4S|1|2|G|172
8G4S|1|2|C|173
8G4S|1|2|G|174
8G4S|1|2|C|175
8G4S|1|2|C|176
8G4S|1|2|C|177
8G4S|1|2|G|180
8G4S|1|2|G|181
*
8G4S|1|2|C|187
8G4S|1|2|A|188
8G4S|1|2|G|189
8G4S|1|2|C|190

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8

Chain L

SSU ribosomal protein S17P