IL_8G4S_021

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GUUGAAA*UC

Length

9 nucleotides

Bulged bases

8G4S|1|2|G|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_021 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1427

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8G4S|1|2|G|496
8G4S|1|2|U|497
8G4S|1|2|U|498
8G4S|1|2|G|499
8G4S|1|2|A|500
8G4S|1|2|A|501
8G4S|1|2|A|502
*
8G4S|1|2|U|845
8G4S|1|2|C|846

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

SSU ribosomal protein S12P

Chain a

40S ribosomal protein S26