IL_8G4S_028

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GA*UGUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_028 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.1375

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

8G4S|1|2|G|616
8G4S|1|2|A|617
*
8G4S|1|2|U|713
8G4S|1|2|G|714
8G4S|1|2|U|715
8G4S|1|2|C|716

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

SSU ribosomal protein S17P

Chain N

Ribosomal protein S13

Chain W

SSU ribosomal protein S8P (Fragment)

Chain b

Ribosomal protein S27