IL_8G4S_029

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

8G4S|1|2|C|710

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_029 not in the Motif Atlas

Geometric match to IL_1S03_006

Geometric discrepancy: 0.2521

The information below is about IL_1S03_006

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8G4S|1|2|A|619
8G4S|1|2|G|620
*
8G4S|1|2|C|709
8G4S|1|2|C|710
8G4S|1|2|U|711

Current chains

Chain 2

18S rRNA

Nearby chains

Chain N

Ribosomal protein S13

Chain b

Ribosomal protein S27