IL_8G4S_035

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGGCUA*UUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_035 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.2199

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8G4S|1|2|G|736
8G4S|1|2|G|737
8G4S|1|2|G|738
8G4S|1|2|C|739
8G4S|1|2|U|740
8G4S|1|2|A|741
*
8G4S|1|2|U|765
8G4S|1|2|U|766
8G4S|1|2|C|767

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

Ribosomal protein S14

Chain a

40S ribosomal protein S26