IL_8G4S_038
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- CGC*GCUCCGG
- Length
- 10 nucleotides
- Bulged bases
- 8G4S|1|2|C|837, 8G4S|1|2|C|839, 8G4S|1|2|G|841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G4S_038 not in the Motif Atlas
- Homologous match to IL_8C3A_443
- Geometric discrepancy: 0.1954
- The information below is about IL_8C3A_443
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47729.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8G4S|1|2|C|785
8G4S|1|2|G|786
8G4S|1|2|C|787
*
8G4S|1|2|G|836
8G4S|1|2|C|837
8G4S|1|2|U|838
8G4S|1|2|C|839
8G4S|1|2|C|840
8G4S|1|2|G|841
8G4S|1|2|G|842
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain C
- Ribosomal protein S2
- Chain L
- SSU ribosomal protein S17P
- Chain N
- Ribosomal protein S13
- Chain W
- SSU ribosomal protein S8P (Fragment)
- Chain X
- SSU ribosomal protein S12P
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