IL_8G4S_045

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

UCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_045 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.1468

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8G4S|1|2|U|914
8G4S|1|2|C|915
8G4S|1|2|U|916
*
8G4S|1|2|G|1167
8G4S|1|2|C|1168
8G4S|1|2|G|1169

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

Ribosomal protein S16

Chain S

Ribosomal protein S18

Chain T

SSU ribosomal protein S19E (Fragment)

Chain h

Transfer RNA; tRNA