IL_8G4S_054

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8G4S|1|2|A|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_054 not in the Motif Atlas

Homologous match to IL_8C3A_458

Geometric discrepancy: 0.143

The information below is about IL_8C3A_458

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8G4S|1|2|C|1019
8G4S|1|2|G|1020
*
8G4S|1|2|C|1129
8G4S|1|2|A|1130
8G4S|1|2|G|1131

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

Ribosomal protein S2

Chain D

Ribosomal protein S3

Chain U

Ribosomal protein S20

Chain d

Ribosomal protein S29A

Chain i

Transfer RNA; tRNA

Chain k

mRNA