IL_8G4S_056

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8G4S|1|2|U|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_056 not in the Motif Atlas

Geometric match to IL_2R8S_004

Geometric discrepancy: 0.3282

The information below is about IL_2R8S_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8G4S|1|2|C|1045
8G4S|1|2|U|1046
8G4S|1|2|G|1047
*
8G4S|1|2|C|1056
8G4S|1|2|G|1057

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

Ribosomal protein S17

Chain a

40S ribosomal protein S26