IL_8G4S_059

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGGACC*GCGCAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_059 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.1558

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8G4S|1|2|G|1227
8G4S|1|2|G|1228
8G4S|1|2|G|1229
8G4S|1|2|A|1230
8G4S|1|2|C|1231
8G4S|1|2|C|1232
*
8G4S|1|2|G|1251
8G4S|1|2|C|1252
8G4S|1|2|G|1253
8G4S|1|2|C|1254
8G4S|1|2|A|1255
8G4S|1|2|C|1256

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

Ribosomal protein S18

Chain T

SSU ribosomal protein S19E (Fragment)