IL_8G4S_078

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CGGU*AG

Length

6 nucleotides

Bulged bases

8G4S|1|2|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_078 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.2791

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8G4S|1|2|C|232
8G4S|1|2|G|233
8G4S|1|2|G|234
8G4S|1|2|U|235
*
8G4S|1|2|A|257
8G4S|1|2|G|258

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

SSU ribosomal protein S17P