IL_8G5Y_023

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GCGC*GUC

Length

7 nucleotides

Bulged bases

8G5Y|1|L5|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Y_023 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.262

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8G5Y|1|L5|G|448
8G5Y|1|L5|C|449
8G5Y|1|L5|G|450
8G5Y|1|L5|C|451
*
8G5Y|1|L5|G|1296
8G5Y|1|L5|U|1297
8G5Y|1|L5|C|1298

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a

Chain Lr

60S ribosomal protein L28