IL_8G5Y_027

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

8G5Y|1|L5|G|483, 8G5Y|1|L5|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Y_027 not in the Motif Atlas

Geometric match to IL_4LFB_007

Geometric discrepancy: 0.2616

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8G5Y|1|L5|G|482
8G5Y|1|L5|G|483
8G5Y|1|L5|U|484
8G5Y|1|L5|C|485
*
8G5Y|1|L5|G|671
8G5Y|1|L5|C|672

Current chains

Chain L5

28S rRNA

Nearby chains