IL_8G5Y_045

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CUCG*CGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Y_045 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.3281

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8G5Y|1|L5|C|1099
8G5Y|1|L5|U|1100
8G5Y|1|L5|C|1101
8G5Y|1|L5|G|1168
*
8G5Y|1|L5|C|1193
8G5Y|1|L5|G|1194
8G5Y|1|L5|G|1195
8G5Y|1|L5|G|1196

Current chains

Chain L5

28S rRNA

Nearby chains