IL_8G5Y_114

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8G5Y|1|L5|A|3828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Y_114 not in the Motif Atlas

Geometric match to IL_4V9F_064

Geometric discrepancy: 0.0847

The information below is about IL_4V9F_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8G5Y|1|L5|C|3632
8G5Y|1|L5|C|3633
*
8G5Y|1|L5|G|3827
8G5Y|1|L5|A|3828
8G5Y|1|L5|G|3829

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41