IL_8G5Y_215

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8G5Y|1|S2|U|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Y_215 not in the Motif Atlas

Geometric match to IL_4V9F_029

Geometric discrepancy: 0.3094

The information below is about IL_4V9F_029

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8G5Y|1|S2|C|322
8G5Y|1|S2|C|323
*
8G5Y|1|S2|G|327
8G5Y|1|S2|U|328
8G5Y|1|S2|G|329

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6