IL_8G5Z_037

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

8G5Z|1|L5|G|729, 8G5Z|1|L5|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_037 not in the Motif Atlas

Geometric match to IL_8GLP_036

Geometric discrepancy: 0.0488

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8G5Z|1|L5|C|727
8G5Z|1|L5|U|728
8G5Z|1|L5|G|729
8G5Z|1|L5|G|730
8G5Z|1|L5|G|731
*
8G5Z|1|L5|C|938
8G5Z|1|L5|G|939

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a