IL_8G5Z_038

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

8G5Z|1|L5|A|932, 8G5Z|1|L5|C|934, 8G5Z|1|L5|A|935, 8G5Z|1|L5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G5Z|1|L5|A|732
8G5Z|1|L5|A|733
8G5Z|1|L5|G|734
8G5Z|1|L5|G|735
*
8G5Z|1|L5|C|928
8G5Z|1|L5|A|929
8G5Z|1|L5|G|930
8G5Z|1|L5|C|931
8G5Z|1|L5|A|932
8G5Z|1|L5|G|933
8G5Z|1|L5|C|934
8G5Z|1|L5|A|935
8G5Z|1|L5|C|936
8G5Z|1|L5|U|937

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a