IL_8G5Z_131
3D structure
- PDB id
- 8G5Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GAA*UACC
- Length
- 7 nucleotides
- Bulged bases
- 8G5Z|1|L5|A|3901, 8G5Z|1|L5|C|4560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G5Z_131 not in the Motif Atlas
- Homologous match to IL_5TBW_092
- Geometric discrepancy: 0.0786
- The information below is about IL_5TBW_092
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_54678.7
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8G5Z|1|L5|G|3900
8G5Z|1|L5|A|3901
8G5Z|1|L5|A|3902
*
8G5Z|1|L5|U|4558
8G5Z|1|L5|A|4559
8G5Z|1|L5|C|4560
8G5Z|1|L5|C|4561
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LP
- 60S ribosomal protein L17
Coloring options: