IL_8G5Z_159

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8G5Z|1|L5|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_159 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.2208

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8G5Z|1|L5|C|4537
8G5Z|1|L5|G|4538
*
8G5Z|1|L5|C|4547
8G5Z|1|L5|A|4548
8G5Z|1|L5|G|4549

Current chains

Chain L5

28S rRNA

Nearby chains

Chain 5A

eIF5A1

Chain LA

uL2

Chain Pt

Transfer RNA; tRNA