IL_8G5Z_163

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8G5Z|1|L5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_163 not in the Motif Atlas

Geometric match to IL_6E7L_002

Geometric discrepancy: 0.3587

The information below is about IL_6E7L_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_69065.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

8G5Z|1|L5|C|4582
8G5Z|1|L5|C|4583
8G5Z|1|L5|A|4584
8G5Z|1|L5|U|4585
*
8G5Z|1|L5|A|4717
8G5Z|1|L5|G|4718
8G5Z|1|L5|G|4719
8G5Z|1|L5|C|4720
8G5Z|1|L5|G|4721

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a