IL_8G5Z_195

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CAAA*UGA(OMC)G

Length

9 nucleotides

Bulged bases

8G5Z|1|S2|A|516

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_195 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3349

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8G5Z|1|S2|C|37
8G5Z|1|S2|A|38
8G5Z|1|S2|A|39
8G5Z|1|S2|A|40
*
8G5Z|1|S2|U|514
8G5Z|1|S2|G|515
8G5Z|1|S2|A|516
8G5Z|1|S2|OMC|517
8G5Z|1|S2|G|518

Current chains

Chain S2

18S rRNA

Nearby chains

Chain EF

Elongation factor 1-alpha 1

Chain SE

eS4

Chain SJ

40S ribosomal protein S9