IL_8G5Z_225

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8G5Z|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_225 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.4782

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8G5Z|1|S2|G|606
8G5Z|1|S2|U|607
8G5Z|1|S2|C|608
*
8G5Z|1|S2|G|635
8G5Z|1|S2|C|636

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SJ

40S ribosomal protein S9

Chain Se

40S ribosomal protein S30