IL_8G5Z_258

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_258 not in the Motif Atlas

Homologous match to IL_4V88_446

Geometric discrepancy: 0.1569

The information below is about IL_4V88_446

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8G5Z|1|S2|G|1270
8G5Z|1|S2|C|1271
8G5Z|1|S2|C|1272
*
8G5Z|1|S2|G|1510
8G5Z|1|S2|U|1511
8G5Z|1|S2|C|1512

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

eS10

Chain SP

uS19

Chain Sd

40S ribosomal protein S29

Chain Sf

eS31