IL_8G60_015

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGCUC*GGCG

Length

9 nucleotides

Bulged bases

8G60|1|L5|U|184

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_015 not in the Motif Atlas

Geometric match to IL_8CRE_401

Geometric discrepancy: 0.3748

The information below is about IL_8CRE_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8G60|1|L5|C|181
8G60|1|L5|G|182
8G60|1|L5|C|183
8G60|1|L5|U|184
8G60|1|L5|C|185
*
8G60|1|L5|G|253
8G60|1|L5|G|254
8G60|1|L5|C|255
8G60|1|L5|G|256

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

eL13

Chain Lh

uL29