IL_8G60_023
3D structure
- PDB id
- 8G60 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- GUGAAAC*G(OMU)GGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G60_023 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0598
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8G60|1|L5|G|415
8G60|1|L5|U|416
8G60|1|L5|G|417
8G60|1|L5|A|418
8G60|1|L5|A|419
8G60|1|L5|A|420
8G60|1|L5|C|421
*
8G60|1|L8|G|13
8G60|1|L8|OMU|14
8G60|1|L8|G|15
8G60|1|L8|G|16
8G60|1|L8|A|17
8G60|1|L8|U|18
8G60|1|L8|C|19
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain LC
- uL4
- Chain LP
- uL22
- Chain Le
- eL32
Coloring options: