IL_8G60_031

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGUGUC*GACCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_031 not in the Motif Atlas

Geometric match to IL_8GLP_029

Geometric discrepancy: 0.2975

The information below is about IL_8GLP_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.4

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8G60|1|L5|C|490
8G60|1|L5|G|491
8G60|1|L5|U|492
8G60|1|L5|G|493
8G60|1|L5|U|494
8G60|1|L5|C|495
*
8G60|1|L5|G|659
8G60|1|L5|A|660
8G60|1|L5|C|661
8G60|1|L5|C|662
8G60|1|L5|G|663

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

uL4

Chain LQ

eL18