IL_8G60_033

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8G60|1|L5|C|503

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_033 not in the Motif Atlas

Geometric match to IL_3DIL_001

Geometric discrepancy: 0.2985

The information below is about IL_3DIL_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8G60|1|L5|G|499
8G60|1|L5|C|503
8G60|1|L5|G|504
*
8G60|1|L5|C|654
8G60|1|L5|C|655

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

uL4

Chain LQ

eL18