3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CG*CGG
Length
5 nucleotides
Bulged bases
8G60|1|L5|G|1287
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G60_036 not in the Motif Atlas
Geometric match to IL_4LFB_036
Geometric discrepancy: 0.2473
The information below is about IL_4LFB_036
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_28408.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
60

Unit IDs

8G60|1|L5|C|709
8G60|1|L5|G|710
*
8G60|1|L5|C|1286
8G60|1|L5|G|1287
8G60|1|L5|G|1288

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LE
eL6
Chain Lf
eL33

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1385 s