3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CUCGCAGACCCGAACG*CG
Length
18 nucleotides
Bulged bases
8G60|1|L5|G|1697
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G60_067 not in the Motif Atlas
Homologous match to IL_8P9A_264
Geometric discrepancy: 0.5271
The information below is about IL_8P9A_264
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_25463.2
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
3

Unit IDs

8G60|1|L5|C|1694
8G60|1|L5|U|1695
8G60|1|L5|C|1696
8G60|1|L5|G|1697
8G60|1|L5|C|1698
8G60|1|L5|A|1699
8G60|1|L5|G|1700
8G60|1|L5|A|1701
8G60|1|L5|C|1702
8G60|1|L5|C|1703
8G60|1|L5|C|1704
8G60|1|L5|G|1705
8G60|1|L5|A|1706
8G60|1|L5|A|1719
8G60|1|L5|C|1720
8G60|1|L5|G|1721
*
8G60|1|L5|C|1841
8G60|1|L5|G|1842

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LC
uL4
Chain LF
uL30
Chain LQ
eL18
Chain LT
eL21
Chain Lb
eL29

Coloring options:


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