IL_8G60_090

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CCUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8G60|1|L5|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_090 not in the Motif Atlas

Homologous match to IL_5TBW_059

Geometric discrepancy: 0.1237

The information below is about IL_5TBW_059

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.5

Basepair signature

cWW-cWW-tSS-tSH-tHS-cWW-tHS

Number of instances in this motif group

32

Unit IDs

8G60|1|L5|C|2302
8G60|1|L5|C|2303
8G60|1|L5|U|2304
8G60|1|L5|U|2305
8G60|1|L5|G|2306
8G60|1|L5|A|2307
8G60|1|L5|A|2308
8G60|1|L5|G|2309
*
8G60|1|L5|U|2329
8G60|1|L5|G|2330
8G60|1|L5|G|2331
8G60|1|L5|A|2332
8G60|1|L5|G|2333

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

uL4

Chain LY

uL24

Chain Le

eL32