IL_8G60_101

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8G60|1|L5|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_101 not in the Motif Atlas

Geometric match to IL_3MJA_001

Geometric discrepancy: 0.3932

The information below is about IL_3MJA_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8G60|1|L5|C|2613
8G60|1|L5|C|2614
*
8G60|1|L5|G|2724
8G60|1|L5|A|2725
8G60|1|L5|G|2726

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

eL19

Chain Lg

eL34