3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G60_149 not in the Motif Atlas
Homologous match to IL_8C3A_114
Geometric discrepancy: 0.1301
The information below is about IL_8C3A_114
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65585.1
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

8G60|1|L5|C|4412
8G60|1|L5|C|4413
8G60|1|L5|A|4414
8G60|1|L5|A|4415
8G60|1|L5|G|4416
*
8G60|1|L5|C|4426
8G60|1|L5|G|4427
8G60|1|L5|A|4428
8G60|1|L5|C|4429
8G60|1|L5|G|4430

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LI
uL16
Chain Lm
eL40

Coloring options:


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