IL_8G60_222

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_222 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.2233

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8G60|1|S2|U|566
8G60|1|S2|C|567
8G60|1|S2|C|568
8G60|1|S2|A|569
*
8G60|1|S2|U|581
8G60|1|S2|U|582
8G60|1|S2|A|583
8G60|1|S2|A|584

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

uS4

Chain SY

eS24