3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
UGC*GGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G60_247 not in the Motif Atlas
Geometric match to IL_4WF9_083
Geometric discrepancy: 0.1633
The information below is about IL_4WF9_083
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

8G60|1|S2|U|1101
8G60|1|S2|G|1102
8G60|1|S2|C|1103
*
8G60|1|S2|G|1129
8G60|1|S2|G|1130
8G60|1|S2|G|1131

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SB
eS1
Chain SN
uS15
Chain SR
eS17
Chain Sa
eS26
Chain Sb
eS27

Coloring options:


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