IL_8G60_248

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_248 not in the Motif Atlas

Geometric match to IL_4V88_412

Geometric discrepancy: 0.1501

The information below is about IL_4V88_412

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8G60|1|S2|G|1108
8G60|1|S2|C|1109
8G60|1|S2|G|1110
*
8G60|1|S2|C|1123
8G60|1|S2|C|1124

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

uS2

Chain SB

eS1

Chain SR

eS17

Chain Sb

eS27