IL_8G60_257

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_257 not in the Motif Atlas

Geometric match to IL_6IA2_004

Geometric discrepancy: 0.117

The information below is about IL_6IA2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8G60|1|S2|G|1270
8G60|1|S2|C|1271
8G60|1|S2|C|1272
*
8G60|1|S2|G|1510
8G60|1|S2|U|1511
8G60|1|S2|C|1512

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

eS10

Chain SP

uS19

Chain Sd

uS14

Chain Sf

eS31