IL_8G60_272

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_272 not in the Motif Atlas

Geometric match to IL_3SZX_002

Geometric discrepancy: 0.0839

The information below is about IL_3SZX_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8G60|1|S2|A|1537
8G60|1|S2|C|1538
8G60|1|S2|U|1539
*
8G60|1|S2|A|1594
8G60|1|S2|U|1595
8G60|1|S2|U|1596

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

uS7

Chain SQ

uS9

Chain SS

uS13

Chain ST

eS19

Chain SZ

eS25