IL_8G60_325

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_325 not in the Motif Atlas

Homologous match to IL_8P9A_382

Geometric discrepancy: 0.2158

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8G60|1|S2|OMU|116
8G60|1|S2|C|117
8G60|1|S2|C|118
8G60|1|S2|PSU|119
8G60|1|S2|U|120
8G60|1|S2|OMU|121
*
8G60|1|S2|A|343
8G60|1|S2|U|344
8G60|1|S2|U|345
8G60|1|S2|C|346
8G60|1|S2|G|347

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

eS4

Chain SI

eS8