IL_8G60_329

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UUA*U(A2M)

Length

5 nucleotides

Bulged bases

8G60|1|S2|U|488

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_329 not in the Motif Atlas

Homologous match to IL_8P9A_396

Geometric discrepancy: 0.1132

The information below is about IL_8P9A_396

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8G60|1|S2|U|487
8G60|1|S2|U|488
8G60|1|S2|A|489
*
8G60|1|S2|U|511
8G60|1|S2|A2M|512

Current chains

Chain S2

18S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain EF

eEF1A

Chain SE

eS4

Chain SJ

uS4

Chain SY

eS24