IL_8G60_330

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CCACU*A(OMG)

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_330 not in the Motif Atlas

Homologous match to IL_8P9A_397

Geometric discrepancy: 0.0828

The information below is about IL_8P9A_397

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

8G60|1|S2|C|491
8G60|1|S2|C|492
8G60|1|S2|A|493
8G60|1|S2|C|494
8G60|1|S2|U|495
*
8G60|1|S2|A|508
8G60|1|S2|OMG|509

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

eS4

Chain SJ

uS4

Chain SY

eS24