IL_8G60_339

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

(4AC)G*CA(OMG)

Length

5 nucleotides

Bulged bases

8G60|1|S2|A|1489

QA status

Modified nucleotides: 4AC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_339 not in the Motif Atlas

Homologous match to IL_8C3A_458

Geometric discrepancy: 0.108

The information below is about IL_8C3A_458

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8G60|1|S2|4AC|1337
8G60|1|S2|G|1338
*
8G60|1|S2|C|1488
8G60|1|S2|A|1489
8G60|1|S2|OMG|1490

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

uS5

Chain SD

uS3

Chain SQ

uS9

Chain SU

uS10

Chain Sd

uS14