IL_8G60_343

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_343 not in the Motif Atlas

Geometric match to IL_4WF9_106

Geometric discrepancy: 0.3248

The information below is about IL_4WF9_106

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_78536.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8G60|1|L5|U|2485
8G60|1|L5|G|2486
8G60|1|L5|G|2487
*
8G60|1|L5|C|2492
8G60|1|L5|G|2493

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA