IL_8G6J_001

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AG*CGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_001 not in the Motif Atlas

Homologous match to IL_5WT1_001

Geometric discrepancy: 0.2968

The information below is about IL_5WT1_001

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_78536.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8G6J|1|At|A|26
8G6J|1|At|G|27
*
8G6J|1|At|C|43
8G6J|1|At|G|44
8G6J|1|At|U|45

Current chains

Chain At

A-site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Se

FAU ubiquitin-like and ribosomal protein S30