IL_8G6J_024

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCG*UC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_024 not in the Motif Atlas

Geometric match to IL_4LFB_028

Geometric discrepancy: 0.2963

The information below is about IL_4LFB_028

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

8G6J|1|L5|G|448
8G6J|1|L5|C|449
8G6J|1|L5|G|450
*
8G6J|1|L5|U|1297
8G6J|1|L5|C|1298

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a