IL_8G6J_029

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

8G6J|1|L5|G|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_029 not in the Motif Atlas

Geometric match to IL_1F1T_002

Geometric discrepancy: 0.3145

The information below is about IL_1F1T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73452.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8G6J|1|L5|G|487
8G6J|1|L5|G|488
*
8G6J|1|L5|C|665
8G6J|1|L5|G|666
8G6J|1|L5|A|667
8G6J|1|L5|C|668
8G6J|1|L5|C|669

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lr

60S ribosomal protein L28