IL_8G6J_033

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

8G6J|1|L5|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_033 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2402

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8G6J|1|L5|G|508
8G6J|1|L5|A|509
8G6J|1|L5|U|510
*
8G6J|1|L5|A|649
8G6J|1|L5|C|650

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

eL13

Chain La

60S ribosomal protein L27a