IL_8G6J_085

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

8G6J|1|L5|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_085 not in the Motif Atlas

Geometric match to IL_3DIL_001

Geometric discrepancy: 0.3634

The information below is about IL_3DIL_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8G6J|1|L5|C|2083
8G6J|1|L5|C|2084
8G6J|1|L5|G|2085
*
8G6J|1|L5|C|2272
8G6J|1|L5|G|2273

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain Le

60S ribosomal protein L32